Preheat oven to 425F. Line a 12-cup muffin tin with muffin liners and set aside.
Place oats in a medium nonstick pan and set over medium heat. Stir oats around 4-6 minutes until fragrant and a light golden brown. Pulse oats in a food processor several times until finely chopped or finely chop with a knife. Set aside.
In a large bowl, beat butter, sugar, and honey together until smooth and creamy. Beat in eggs, applesauce, vanilla extract, and orange zest until smooth.
In a separate medium bowl, combine flour, toasted oats, baking powder, baking soda, salt, cinnamon, and nutmeg. Add flour in 1/3 increments with milk to butter mixture, folding batter until just combined. Fold in cranberries. Fill muffin cups to brim with batter and set aside for a moment.